miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|22439765|gb|BU005370.1|BU005370 CCCGGGAATCACATTCTACTGCTTCTTCAGATGTTGTCGTTGAGAAATCATCTGGAAATGCTTCGAGTATCTCTGCTCTT
GAACAGCTCAAAACCTCTGCAGCTGACAGGTATACAAAAGAAAAGAGTAGCATTATAGTTATTGGGCTTAGTATCCATAC
TTGTCCTGTAGAAATGAGGGAAAAACTTGCAATTCCTGAAGCAGAGTGGCCAAGAGCAATCAAAGAGCTATGTGCTTTGA
ACCACATAGAAGAAGCTGCTGTTCTGTCTACATGTAATCGCATGGAGATTTATGTTGTAGCTTTGTCTCAGCATCGAGGA
GTAAAGGAAGTGACTGAATGGATGTCAAAGACTGGTGGAATCCCGGTTTCTGAGATTTCCGATCACCGTTTTCTGCTATA
CAACAGTGACGCAACCCGCCACATCTTCCAAGTGTCCGCCGGACTCGAATCATTGGTGCTCGGAGAGGGCCAAATCCTCG
CTCAGGTGAAACAAGTCGCTAAAGTTAGCCAAGGAGTCGCAGGGTTTGGAAGGAACATTAGCGGTTTATTCAAGCACGCC
ATCATGGTCGGGAAACGTGTTCGAACTGAAACCAAAATCGCCNNNNGAGCAGTTTCCGTCAGCTCAGCCGCCGTGGAGTT
AGCCCTAATGAAACTTCCCAATTCCGCCCATTCCACCGCTAGAGTTTTACTCCTCGGAGCTGGGAAAATGGGAAAACTAG
TCATCAAACATTTGAT




Most similar to sp|P93111|HEM11_CUCSA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P93111|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic
           OS=Cucumis sativus GN=HEMA1 PE=2 SV=1
          Length = 552

 Score =  369 bits (948), Expect = e-102
 Identities = 192/241 (79%), Positives = 208/241 (86%), Gaps = 3/241 (1%)
 Frame = +3

Query: 21  ASSDVVVEKSS---GNASSISALEQLKTSAADRYTKEKSSIIVIGLSIHTCPVEMREKLA 191
           ASSDV+V+        +S++SALEQLKTSA DRYTKE+SSI+VIGLSIHT PVEMREKLA
Sbjct: 64  ASSDVLVQNDEIDPPKSSNLSALEQLKTSAVDRYTKERSSIVVIGLSIHTTPVEMREKLA 123

Query: 192 IPEAEWPRAIKELCALNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTGGIPVS 371
           IPEAEWPRAI ELC LNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKT GIPVS
Sbjct: 124 IPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVS 183

Query: 372 EISDHRFLLYNSDATRHIFQVSAGLESLVLGEGQILAQVKQVAKVSQGVAGFGRNISGLF 551
           EI  HRFLLYN+DAT+HIF+VSAGL+SLVLGEGQILAQVKQV KV QGVAGFGRNISGLF
Sbjct: 184 EICQHRFLLYNNDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVAGFGRNISGLF 243

Query: 552 KHAIMVGKRVRTETKIXXXXXXXXXXXXELALMKLPNSAHSTARVLLLGAGKMGKLVIKH 731
           KHAI VGKRVRTET I            ELALMKLP  +H+TAR+L++GAGKMGKLVIKH
Sbjct: 244 KHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEPSHATARMLVIGAGKMGKLVIKH 303

Query: 732 L 734
           L
Sbjct: 304 L 304